PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G16760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38009.1 Da PI: 6.6162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.5 | 2.7e-49 | 42 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPt+eel+ +yL++kveg+++++ e i+ +d+y+++Pw+Lp+++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + + OBART05G16760.1 42 MPGFRFHPTEEELIEFYLRRKVEGRRFNV-ELITFLDLYRFDPWELPAMAVIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGE 134 79***************************.89***************7777899**************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkktLvfy+g+apkg++++W+m+eyrl OBART05G16760.1 135 NSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-57 | 41 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.849 | 41 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-24 | 43 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSRDDVDDVT AGAAGSGEEA AADQEEATAA VAGDSHENDL VMPGFRFHPT EEELIEFYLR 60 RKVEGRRFNV ELITFLDLYR FDPWELPAMA VIGEKEWFFY VPRDRKYRNG DRPNRVTASG 120 YWKATGADRM IRGENSRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP AADADLFYKS 180 EISLCRVYKR SGIDDGHGHH QRPAGNVQAS SSSAAARPPE QHSGNNTAAG LPACRHRPSP 240 SSSSTTTAQQ HTSFHQLLQG DSSTHIDELS TLLAGHSHGG AYGNNHIVAG SHHHFPLPPS 300 QLMPQLGTLP ISPPLAAVSD KLWDWSSVPD TSTARDYDSS GFSDPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-56 | 43 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-56 | 43 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-56 | 43 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-56 | 43 | 190 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-56 | 43 | 190 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 6e-56 | 43 | 190 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-56 | 43 | 190 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102902 | 1e-180 | AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655332.1 | 1e-162 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0D3G7Q5 | 0.0 | A0A0D3G7Q5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G16760.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 2e-96 | NAC domain containing protein 35 |