PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G12580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 418aa    MW: 45097.2 Da    PI: 4.5349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G12580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18132182155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  OBART05G12580.1 132 CDFRGVRQRT-WGKWVAEIREP---N-RqSRLWLGTFPTAEAAACAYDEAARAMYG 182
                      689****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-12132182IPR001471AP2/ERF domain
CDDcd000183.09E-17132189No hitNo description
SMARTSM003807.2E-33133196IPR001471AP2/ERF domain
PROSITE profilePS5103221.338133190IPR001471AP2/ERF domain
PRINTSPR003672.7E-9134145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-30134190IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-20134190IPR016177DNA-binding domain
PRINTSPR003672.7E-9156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTVDQRTTAK AIMPPVEMPP VQPGRKCGGE ESTGNLDSVQ PIGALPCNEH ALLAQQTPKG  60
DAPSVGSKIW KKRPRRSRDG PTSVAETIKR WAELNNQQEL DPQGPKKARK APAKGSKKGC  120
MKGKGGPENT RCDFRGVRQR TWGKWVAEIR EPNRQSRLWL GTFPTAEAAA CAYDEAARAM  180
YGAMARTNFG QHHAPAASVQ VAQAAVKCAL PGGGLTASKS RTSTQGASAD VQDVLTGCLS  240
ACESTTTTIN NQSDVVSTLH KPEEVSEISS PLRAPPAVLE DGSNEDKAES VTYDENIVSQ  300
QRAPPEAEAS NGRGEEVFEP LEPIASLPED QGDYCFDIDE MLRMMEADPT NEGLWKGDKD  360
GSDAILELGQ DEPFYYEGVD PGMLDNLLRS DEPAWLSADP AMFISGGFED DSQFFEGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-14134189359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9158450.0JF915845.1 Oryza sativa dehydration responsive element binding protein 2B isoform c (DREB2B) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639652.10.0dehydration-responsive element-binding protein 2B isoform X4
SwissprotQ5W6R40.0DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0D3G6C60.0A0A0D3G6C6_9ORYZ; Uncharacterized protein
STRINGOBART05G12580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.25e-28DRE-binding protein 2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]