PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G11960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 110aa MW: 11621.2 Da PI: 8.7545 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.6 | 1e-09 | 11 | 79 | 1 | 70 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 l pG++ +P+d+elv + L ++++g++l+l vi ++d +++ P++L + +++ +e +f +k+ + +++ OBART05G11960.1 11 LLPGLKLDPSDDELVGRCLLRRLQGQSLPLGGVILDADSLSSPPRNLLAD-HGRGDEPFFLAKKGNGKRQ 79 579***************************999**************743.3445577777766554332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-11 | 4 | 93 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.773 | 11 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MAAAAAGADG LLPGLKLDPS DDELVGRCLL RRLQGQSLPL GGVILDADSL SSPPRNLLAD 60 HGRGDEPFFL AKKGNGKRQR SSVEGQRMCV DGGRLRGSFG SYPKDYPSNI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134346 | 1e-135 | AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence. | |||
GenBank | AC137748 | 1e-135 | AC137748.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0076A09, complete sequence. | |||
GenBank | AP014961 | 1e-135 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882797.1 | 3e-33 | NAC transcription factor 32 | ||||
TrEMBL | A0A0D3G652 | 3e-71 | A0A0D3G652_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G11960.1 | 4e-72 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |