PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G11860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 565aa    MW: 60283.6 Da    PI: 3.8394
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G11860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.47.7e-2571441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdke 91 
                      l pG++F+P+d++lv +yL ++++g++l+l+ vi e+d +++ Pw+L +  +++ +e +fF++++ k+ +gkr++r +   g+W+  +t  d e
  OBART05G11860.1   7 LLPGLKFDPSDHDLVGRYLLRRLQGQPLPLDGVILEADPLSAPPWKLIAD-HGRGDEAFFFAEAHAKNGKGKRQKRtVEGGGFWQgqKTCVDGE 99 
                      579***************************999**************744.456789*******************555599**9334444555 PP

              NAM  92 vlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       l+           + e  + k +L f+  + ++g ++ Wvmhey++
  OBART05G11860.1 100 RLCVpddgcgggggGLEIAWRKYVLSFFA-NGERG-SSGWVMHEYAV 144
                      544466777666544444889999****4.44444.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-305163IPR003441NAC domain
PROSITE profilePS5100527.8257163IPR003441NAC domain
PfamPF023658.8E-159143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MATADGLLPG LKFDPSDHDL VGRYLLRRLQ GQPLPLDGVI LEADPLSAPP WKLIADHGRG  60
DEAFFFAEAH AKNGKGKRQK RTVEGGGFWQ GQKTCVDGER LCVPDDGCGG GGGGLEIAWR  120
KYVLSFFANG ERGSSGWVMH EYAVTAPDGL ASSQLRLYRV RFSGYGKKRK REPQCPGAHG  180
DDDGELQRAP PPRSMAETAL LEERGPLPHP VLGPASVVDQ CTDQGSSGVI DDSSLVFRDL  240
PDLIDLPVAE EADASHGAET ALLNEHLPLP PPQLFVPPTA VPLDLADDSN GADQNSYGMM  300
GDDQLLLPDL PGTINDDMPD LFVSQAEEAS AVPAISYHSS GFMGNEVAAL SDFELPESYS  360
SSDAMDGEAL ALSNYEFPES FEEDLSCIDF ATANASSLGF PMDGYPMDEL FDDMPDQGSS  420
GAMDDSSVVF RDLPGLINLP AAEEADAIGD AETALLRDLA DDSNGSDRNS YGVMGDDQDR  480
LLLPEIPRRI DMPDLFVSQA EEAGLGGGAA LDSSSGAMDG EALALSDFEF HESVEEVLSC  540
MDFSTVDMSC LDVPIDELLD DLPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343460.0AC134346.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0018A03, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638590.10.0uncharacterized protein LOC107275325
TrEMBLA0A0D3G6410.0A0A0D3G641_9ORYZ; Uncharacterized protein
STRINGOBART05G11860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137