PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G11630.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 171aa MW: 18876.5 Da PI: 6.7956 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.1 | 4.1e-15 | 50 | 96 | 11 | 57 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 le+L++ + ++ yp+++ r+eL+ klgLt++q ++WF+ rR k++k OBART05G11630.2 50 SLEVLKRTYTEDLYPNETIRAELSVKLGLTDKQLQMWFCHRRLKDRK 96 589******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.5E-6 | 39 | 101 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-12 | 48 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-13 | 50 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.8E-13 | 50 | 96 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.151 | 50 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.63E-10 | 51 | 97 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDLGAASAVA VSSSGGRRAT GEIGQRQVES AGERLWIQRE GEAHHEDALS LEVLKRTYTE 60 DLYPNETIRA ELSVKLGLTD KQLQMWFCHR RLKDRKPPPK RQQLEEEVHV PVMAPPPVLP 120 PPLPHSELTM APGGMYGEQL LPSSSRRGTG RPSAILDMSD LQCLPLLTSH G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639400.1 | 5e-43 | homeobox-DDT domain protein RLT2 isoform X1 | ||||
Refseq | XP_015639401.1 | 5e-43 | homeobox-DDT domain protein RLT2 isoform X2 | ||||
TrEMBL | A0A0D3G618 | 1e-120 | A0A0D3G618_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G11630.2 | 1e-121 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.2 | 2e-14 | Homeodomain-like transcriptional regulator |