PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G06140.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 313aa MW: 34612 Da PI: 8.5851 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.8 | 1.8e-35 | 48 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 +p+G+rF+Ptd+el+ e+L++kv++ ++++ + i+ +i++++P++Lp v+ + + +fF++++k+y+tg+rk+r+ OBART05G06140.2 48 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKvladqqpdd 139 699************.99******9987777664443344777756**********.555666799******************88******** PP NAM 78 ...........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++ +W++tgk++e+++ +g+ +g+kk+Lv+y g+++k+ekt+Wvmh+y+l OBART05G06140.2 140 hpqaskgrnvaAAETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 202 ********99877899************.999***********55589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-35 | 40 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.921 | 48 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-16 | 49 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MSSDGASGSI GMKHDDGDHR PITGASSRRC PSCGHDPDCN KPFDMVGMPA GVRFDPTDQE 60 LIEHLEAKVK DGGSTSHPLI DEFIHTIQGE DGICYTHPEN LPGVTRDGLS KHFFHRSAKA 120 YPTGTRKRRK VLADQQPDDH PQASKGRNVA AAETRWHKTG KTREITVRGQ PKGCKKILVL 180 YTSFGKKRKA EKTSWVMHQY HLGELDDEKE GELILSKVFY QTQTRSAAAA EAPVSSGAAM 240 EVQGQQQQVL KLQADDAQVK VDRGHHCMPA QRQVNFNLKV TPVPTTSSFP VVVDKQLYSP 300 VALFRSEHLH VGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-12 | 46 | 202 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242227 | 0.0 | AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence. | |||
GenBank | JQ088096 | 0.0 | JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637950.1 | 0.0 | NAC domain-containing protein 75 isoform X2 | ||||
Swissprot | Q9M0F8 | 5e-92 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A0D3G465 | 0.0 | A0A0D3G465_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G06140.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17425 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 2e-84 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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