PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G06140.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 301aa MW: 33267.6 Da PI: 9.1717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G06140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.6	2.4e-36	48	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 +p+G+rF+Ptd+el+ e+L++kv++ ++++ + i+ +i++++P++Lp v+ + + +fF++++k+y+tg+rk+r+ + OBART05G06140.1 48 MPAGVRFDPTDQELI-EHLEAKVKDGGstshplIDEFIHtIQGEdGICYTHPENLP-GVTRDGLSKHFFHRSAKAYPTGTRKRRKaskgrnvaA 139 699**********.99**9987777664443344777756******.555666799**************7577777665 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk++e+++ +g+ +g+kk+Lv+y g+++k+ekt+Wvmh+y+l OBART05G06140.1 140 AETRWHKTGKTREITV-RGQPKGCKKILVLYtsFGKKRKAEKTSWVMHQYHL 190 5888********.999*******55589************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-37	40	209	IPR003441	NAC domain
PROSITE profile	PS51005	33.298	48	209	IPR003441	NAC domain
Pfam	PF02365	2.4E-17	49	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSSDGASGSI GMKHDDGDHR PITGASSRRC PSCGHDPDCN KPFDMVGMPA GVRFDPTDQE 60 LIEHLEAKVK DGGSTSHPLI DEFIHTIQGE DGICYTHPEN LPGVTRDGLS KHFFHRSAKA 120 YPTGTRKRRK ASKGRNVAAA ETRWHKTGKT REITVRGQPK GCKKILVLYT SFGKKRKAEK 180 TSWVMHQYHL GELDDEKEGE LILSKVFYQT QTRSAAAAEA PVSSGAAMEV QGQQQQVLKL 240 QADDAQVKVD RGHHCMPAQR QVNFNLKVTP VPTTSSFPVV VDKQLYSPVA LFRSEHLHVG 300 Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-14	46	190	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK242227	0.0	AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBank	JQ088096	0.0	JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637950.1	0.0	NAC domain-containing protein 75 isoform X2
Swissprot	Q9M0F8	7e-91	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0D3G464	0.0	A0A0D3G464_9ORYZ; Uncharacterized protein
STRING	OBART05G06140.2	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	3e-83	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]