PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G00910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 355aa    MW: 36871 Da    PI: 8.5766
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G00910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.23.2e-37103161361
           zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      e  lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+
  OBART05G00910.1 103 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 161
                      56789************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3986160IPR003851Zinc finger, Dof-type
PfamPF027017.4E-32106160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.789106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MIFPPAFLDS SSWNDNNNNN HNQQQQQQQQ QHAHGHHQHH QVATGCGGGG GGGDGNNSHE  60
LLQQQSMIPG TLADGGGGGG AVGPAKPMSM SERARLARIP LPEPGLKCPR CDSTNTKFCY  120
FNNYSLSQPR HFCRACRRYW TRGGALRNVP VGGGYRRHAK RAKPKPASAA GSASAATTTA  180
GSTPAGSTTT TTSSTCATPN APALPAMLGG NLSILPPLLR LADFDAMSLG STFSGMAAAA  240
GKPPPVDAAG CYSVGAATGL EQWRLQQMQS FPFFHAMDHQ AAMAAPPPAM AMPGMFQLGL  300
DGDGHGGGGG EDGGELHHAM PSSKREGYPR GMYGDHHLAG GYTSYSSATT GNHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089330.0AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638255.11e-164dof zinc finger protein DOF3.6 isoform X1
TrEMBLA0A0D3G2H00.0A0A0D3G2H0_9ORYZ; Uncharacterized protein
STRINGOBART05G00910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-45OBF-binding protein 3