PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G00760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 1386aa    MW: 157716 Da    PI: 8.0907
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G00760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS351.11.7e-1073557201366
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+av+++d   a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +s+ts    ++ l+a++l+  ++P+ + s
  OBART05G00760.1 355 LRNLLIHCAQAVAADDRISASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMASRTS---AESLLKAYSLYLSACPFERAS 445
                      689*************************************************************999998...89999**************** PP

             GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                      +  aNq+Il+a +g+  ++vHi+ f+i  G+QWp+L+q La+ ++gpp+lRiTg++ p++g    e +eetg+rLa++A+ ++vpf+++  +a+
  OBART05G00760.1 446 FAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRLANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFKVPFQYQG-IAS 538
                      ***************999******************************************9999999***********************.7** PP

             GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++   + +++s+ F +rf e l +ys+lfd+++a++pr+
  OBART05G00760.1 539 RWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKIMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 632
                      ********************************************************************************************** PP

             GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                      +e+r+++Er l+g+e+ n++acegaer+er e++++W++r  +aGFk++p++  + k++  + + ++ + +  +e+ g+l++gWk+r+
  OBART05G00760.1 633 NEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKGRK 720
                      *******************************************************************999***************996 PP

2GRAS367.12.4e-112101613834374
             GRAS    4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95  
                       lL++cA+a++s+++  a++lL +++++a pdgd  qRla +f+ +L+arla+++s++y++l +++ts   + + l+a++l++ ++P+  +++
  OBART05G00760.1 1016 LLIQCAQAIASNNHPFASELLRKIRHHALPDGDGSQRLANCFADGLEARLAGTGSQMYEKLMAKQTS---TRDMLKAYHLYFVACPFEMVTY 1104
                       8****************************************************************99...899******************* PP

             GRAS   96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 
                          N++I +a+eg++++Hi+Df+i  G+QWp+L+q La+R++gpp+lRiTgv+ p++g   +e++eetg+rLa++A+ ++vpf+++  +a+r
  OBART05G00760.1 1105 YFSNKTIIDALEGKTTLHIVDFGILFGFQWPCLIQRLAKREGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG-IASR 1195
                       *********************************************************9*****************************.7*** PP

             GRAS  186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 
                       +e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++   +  ++s+ Fl+rf e l +ys+lfd+l++++pr
  OBART05G00760.1 1196 WETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLHMMKRMNPQVFILGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDNNVPR 1287
                       ******************************************************************************************** PP

             GRAS  278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 
                       ++e+ri vE+ l+g+++ n+vacegaer+er e++++W++r+ +aGFk+ p+++ + +   +  + +++d + ++e+sg+l++gWk+r + +
  OBART05G00760.1 1288 NHEARILVEKDLFGNDALNAVACEGAERIERPESYKQWQMRILRAGFKQRPVNQAILNRSVHYKELYHED-FVIDEDSGWLLQGWKGRIIQA 1378
                       ******************************************************9999999999999955.********************* PP

             GRAS  370 vSaWr 374 
                       +S W+
  OBART05G00760.1 1379 LSTWK 1383
                       ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.146329708IPR005202Transcription factor GRAS
PfamPF035146.0E-105355720IPR005202Transcription factor GRAS
PROSITE profilePS50985659871364IPR005202Transcription factor GRAS
PfamPF035148.5E-11010161383IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1386 aa     Download sequence    Send to blast
MAHAPLPSLL CLKEPIYDVV AELELLISKQ LSLYNYSPSD PQLFSQPTTG SRTYLSGAVT  60
IPGICNDKSN LGQQQFQIDA ALSLEYQRIR SSDALCYISR VLMEDVDERV DLHQGEAALQ  120
AAEKPFYDIL GQVYPPSLNR LALHSANEPD TPDESSSRNN YHNRYNSSHS SFNMLQPLPT  180
PLSPYSYGRS LFLPNQHLVS TAWTSTFGIP GFQIRRGAEE AKRFVPIIDK LVIDLDTDRG  240
LSISKMTTKA KVGDKKRYAI FELTDQRHSP YTTDLDILEG RNSKRYAITY CEIIRNDMFD  300
RVLLCYGVEN FAEASNLRKI MTKQARKNSL NGQTRGSAQR KLRGMKQLKK DVVDLRNLLI  360
HCAQAVAADD RISASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI GSQVYRKLMA  420
SRTSAESLLK AYSLYLSACP FERASFAYAN QTILDASKGQ QPRKVHIVHF GICTGFQWPS  480
LIQRLANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFKVP FQYQGIASRW  540
ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKIMRMMNP RVFILGIVNG  600
SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGQEALN IIACEGAERT  660
ERPESYKQWQ ARCLKAGFKQ LPVDPATLKE IINMKKGIYH EDFVADEDGG WLLQGWKGRK  720
SVKKKVTRNN PNINQPDVNK KITNFCFRSL KQCRSSIMDS PEYCQTNSNI TLDYINRILM  780
EEDIDEKISI KKGQDALQAT EKPFYDILGK AYPSSSKETA INGDSQADYP DNGSSSYHEQ  840
ACSGSFVSDL LGSQDAHSIT TDWSSEFDRL ALQFRRGVEE AKRFIPNIEK LVDDPEKNGL  900
YACKQTTETT EQKGKHENKI RNHPHDPHVE HIELMEARNS KHMAISTSET IRDEMFDSIL  960
LCNRQLPGEV ANLRGMMAKE ASDNPKKFQS KGYGKGQRKP HSSKKKQKEA IDLSVLLIQC  1020
AQAIASNNHP FASELLRKIR HHALPDGDGS QRLANCFADG LEARLAGTGS QMYEKLMAKQ  1080
TSTRDMLKAY HLYFVACPFE MVTYYFSNKT IIDALEGKTT LHIVDFGILF GFQWPCLIQR  1140
LAKREGGPPK LRITGVDVPQ PGFRPHERIE ETGKRLAEYA NMFNVPFQYH GIASRWETIC  1200
IEDLSIDKDE VLIINCMSRM RKLGDETENI DSARDRVLHM MKRMNPQVFI LGVVNGLYSS  1260
PFFLTRFREV LFHYSSLFDM LDNNVPRNHE ARILVEKDLF GNDALNAVAC EGAERIERPE  1320
SYKQWQMRIL RAGFKQRPVN QAILNRSVHY KELYHEDFVI DEDSGWLLQG WKGRIIQALS  1380
TWKVET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4835913838375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881341.10.0scarecrow-like protein 9
TrEMBLA0A0D3G2F50.0A0A0D3G2F5_9ORYZ; Uncharacterized protein
STRINGOBART05G00760.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-163GRAS family protein