PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G29160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 838aa    MW: 93106.5 Da    PI: 6.0681
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G29160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22153254199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OBART04G29160.1 153 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 242
                      99***********************9*****86555544..8************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OBART04G29160.1 243 EKNQLLLGIRRA 254
                      99999****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-48138282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-41145268IPR015300DNA-binding pseudobarrel domain
CDDcd100175.60E-21152253No hitNo description
PfamPF023627.9E-21153254IPR003340B3 DNA binding domain
PROSITE profilePS5086312.224153255IPR003340B3 DNA binding domain
SMARTSM010191.4E-23153255IPR003340B3 DNA binding domain
PfamPF065071.6E-32279362IPR010525Auxin response factor
PfamPF023091.7E-7733823IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-7735814No hitNo description
PROSITE profilePS5174524.037739823IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MVAISELGLR VCASLVWSEE EMSSSSAASI GPPPPPAPPE EEKKCLNSEL WHACAGPLVC  60
LPTVGTRVVY FPQGHSEQVA ASTNKEVEGH IPNYPNLPAQ LICQLHDVTM HADVETDEVY  120
AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP  180
PLDFTQQPPA QELIARDIHD IEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI  240
WNEKNQLLLG IRRASRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS  300
EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS  360
VKVGWDESTA GERPPRVSLW EIEPLTTFPM YPSLFPLRVK HPWYSGVASL HDDSNALMWL  420
RGVAGEGGFQ SLNFQSPGIG SWGQQRLHPS LLSSDHDQYQ AVVAAAAASQ SGGYLKQQFL  480
HLQQPMQSPQ EHCNLNPLLQ QQILQQASQQ QIINPDAQNI QTMLSPSAIQ QQLQQLQQMQ  540
QVQNDQKQKI QPDQSYQVPT SAVLPSPTSL PSHLREKFGF SDPNANSSSF ITSSSSDNML  600
DSSFLQGSSK AVDLSRFNQP VASEQQQQQQ QQQAWKQKFM GSQSVSFGGS VLHNSPTSKD  660
GSVENKIGRD VQNQSLFSPQ VDSSSLLYNM VPNLTSNVSD GNLSTIPSGS TYLQNAVYGC  720
LDDSSGLLQN TGENDPATRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIKGQLD  780
DPDRSGWQLV FVDRENDVLL LGDDPWESFV NSVWYIKILS PEDVHKMGKQ GNDPRYLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1614238347388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714550.0AK071455.1 Oryza sativa Japonica Group cDNA clone:J023093B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636872.10.0auxin response factor 12 isoform X1
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A0D3G1I70.0A0A0D3G1I7_9ORYZ; Auxin response factor
STRINGOBART04G29160.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  5. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]