PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G28680.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 438aa    MW: 47707.1 Da    PI: 6.9207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G28680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81e-32255309155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQkYR+
  OBART04G28680.1 255 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQKYRI 309
                      68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.662252312IPR017930Myb domain
SuperFamilySSF466899.14E-18253309IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-30254310IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-24255310IPR006447Myb domain, plants
PfamPF002498.1E-9259308IPR001005SANT/Myb domain
PfamPF143792.3E-22340386IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MVVVVVVVVG CFAILEIDIM NTKKIKLHDC HFGSPLCDPS PAPHLLSSAA AAGLSFHPGL  60
VSSAAQHQQH GAGGWLHEEY YAPRSSPPSS LLAQTCVGSN ATAFYAAENL PQFDFPALGT  120
AAAAAAKAPF RSSESELYRP VDPLLLRADH SVRTYYVRPQ KRDSGERTPL PPPSQQQHQD  180
RIHGLFAGAP TTRLLSGEPK IHSFPPQVAA KPILPAMDAP SLQNQMENQL TRNCIGAATP  240
VTPTGNLAGS GAPSKTRIRW TQDLHERFVD CVNQLGGADK ATPKGILKLM NSDGLTIYHI  300
KSHLQKYRIA KYMPASSEGK QLEKRATGND MQNLDPKTGM QITEALRVQL DVQRRLHEQL  360
EIQRNLQLRI EEQGKRLQKM FEDQLKASRS VMEPQELDDV VAFAAGDGDD DAFDDVDVQL  420
LAVAGSGYDD AGFQSKIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-23255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-23255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-23255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-23255312158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-23255312259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019510.0AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636269.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636270.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636271.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_015636272.10.0uncharacterized protein LOC4337318 isoform X1
RefseqXP_025880593.10.0uncharacterized protein LOC4337318 isoform X1
TrEMBLA0A0D3G1C20.0A0A0D3G1C2_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZS260.0A0A0D9ZS26_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H7480.0A0A0E0H748_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PFB60.0A0A0E0PFB6_ORYRU; Uncharacterized protein
STRINGOGLUM04G28560.10.0(Oryza glumipatula)
STRINGORUFI04G30350.10.0(Oryza rufipogon)
STRINGONIVA04G27220.10.0(Oryza nivara)
STRINGOBART04G28680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.19e-67G2-like family protein