PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G25920.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 217aa    MW: 24772 Da    PI: 8.4487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G25920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.2e-175399455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  OBART04G25920.1 53 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 99
                     59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-1946106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5274998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-2152125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-1752103No hitNo description
PfamPF000106.6E-155499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1855104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEASLGLDQL AAIGSLYQFI RGGGEGKEAA SQEEEQTPKL RPTPTRRSRS AEFHNFSERR  60
RRDRINEKLK ALQELLPNCT KTDKVSMLDE AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ  120
QYMHYITADP SQIPPIRPSE PRPFQITHAT QQRQSNVESD FLSQMQNLHP SEPPQNFLRP  180
PKLQLYTPEQ QRRGLASSSG HNSGWITERN SSYNFLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1066890.0AK106689.1 Oryza sativa Japonica Group cDNA clone:002-114-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634978.11e-129transcription factor PIF1
RefseqXP_015634980.11e-129transcription factor PIF1
TrEMBLA0A0D3G0E71e-158A0A0D3G0E7_9ORYZ; Uncharacterized protein
STRINGOBART04G25920.11e-159(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-32phytochrome interacting factor 3-like 5