PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G24070.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 386aa    MW: 41393.1 Da    PI: 7.1
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G24070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.28e-25117161145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  OBART04G24070.1 117 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 161
                      79****************************************996 PP
2QLQ591.4e-205691237
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  OBART04G24070.1 56 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 91
                     9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-115591IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-145690IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1875691IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517117161IPR014977WRC domain
PfamPF088793.9E-21118160IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSSIF PFCRSSPLSA VGEEAQQHMM GARWAAAAAA VARPPPFTAA  60
QYEELEQQAL IYKYLVAGVP VPADLLLPIR RGLDSLASRF YHHPVLGYGS YFGKKLDPEP  120
GRCRRTDGKK WRCSKEAAPD SKYCERHMHR GRNRSRKPVE AQLVAPHSQP PATAPAAAVT  180
STAFQNHSLY PAIANGGGAN GGGGGGGGGG SAPGSFALGS NTQLHMDNAA SYSTVAGAGN  240
KDFRYSAYGV RPLADEHSPL ITGAMDTSID NSWRLLPSQT STFSVSSYPM LGNLSELDQN  300
TICSLPKAER EPLSFFGSDY VTVDSGKQEN QTLRPFFDEW PKARDSWPDL ADDNSLATFS  360
ATQLSISIPM ATSDFSTTSS RSHNDE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5466930.0FJ546693.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 3 (GRF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634334.10.0growth-regulating factor 3 isoform X3
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A0D3FZS20.0A0A0D3FZS2_9ORYZ; Uncharacterized protein
STRINGOBART04G24070.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-45growth-regulating factor 5