PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G24010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 277aa MW: 30660.9 Da PI: 8.7606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.1 | 9.3e-34 | 19 | 73 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl OBART04G24010.1 19 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 73 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-33 | 16 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.502 | 16 | 76 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.5E-24 | 19 | 74 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.7E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-9 | 21 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.8E-21 | 120 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MFEGCYGGVG SAAATRDPKP RLRWTPDLHE RFVDAVTRLG GPDKATPKSV LRLMGMKGLT 60 LYHLKSHLQK YRLGRQSKKS AGLELAVADS GEFTAEGISF SIGAPPRNPA GGNNTGEIPL 120 ADALKYQVEV HRKLQEQLEV QKKLQMRIEA QGRYLKEILE KAQKNIPPDA NGSANLSSTR 180 SQITDINLAL SGFMDNATQV QEENNELMKP ISDDNLKVNN LGFQLYHLGS QESKDVKCTP 240 KTEELLLLDL NIQGGYELSS RGMQGCELDL KINQQRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-21 | 19 | 75 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106400 | 0.0 | AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635409.1 | 0.0 | myb family transcription factor PHL11 isoform X2 | ||||
TrEMBL | A0A0D3FZR6 | 0.0 | A0A0D3FZR6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G24010.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 5e-57 | G2-like family protein |