PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G22880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 427aa    MW: 45609.2 Da    PI: 5.7352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G22880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3941e-29110198185
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F + 
  OBART04G22880.1 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRG 198
                      89***************************955556889************************************************854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-41101215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29107198IPR015300DNA-binding pseudobarrel domain
CDDcd100179.77E-25108195No hitNo description
PROSITE profilePS5086313.733110215IPR003340B3 DNA binding domain
PfamPF023621.0E-26110213IPR003340B3 DNA binding domain
SMARTSM010194.7E-21110215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFATTSSRF SKEEEEEEEG EQEMEQEQDE EEEEAEASPR EIPFMTSAAA AATASSSSPT  60
SVSPSATASA AASTSASGSP FRSSDGAGAS GSGGGGGGED VEVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYFPLDS AANEKGLLLS FEDRTGKLWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKRLDAG DTVSFCRGAA EATRDRLFID WKRRADVRDP HRFQRLPLPM TSPYGPWGGG  240
AGAFFMPPAP PATLYEHHRF RQGFDFRNIN PAVPARQLVF FGSPGTGGVH QHPPFATAAA  300
ATSASSPTPH YGAPPEPLTA GLPMVVDSVP HVNNPAAASK RVRLFGVNLD NPHPDGGQSS  360
SGHDAGHDAN ALSLRMPGWQ RPAPLRSLEL PPHMPAGAAG AESSAASSPS SSSSSKREAH  420
SSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-601052173116B3 domain-containing transcription factor NGA1
5os9_B3e-601052173116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634107.10.0LOW QUALITY PROTEIN: B3 domain-containing protein Os04g0581400-like
SwissprotQ6EU301e-125Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0D3FZC80.0A0A0D3FZC8_9ORYZ; Uncharacterized protein
STRINGOBART04G22880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]