PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART04G22410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 234aa MW: 24691.1 Da PI: 9.8109 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.9 | 2.3e-25 | 138 | 182 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ OBART04G22410.1 138 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 182 69***************************************9987 PP | |||||||
2 | QLQ | 54.2 | 4.4e-19 | 71 | 107 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k OBART04G22410.1 71 SALTFMQRQELEQQVLIYRYFAAGAPVPVHLVLPIWK 107 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.1E-6 | 71 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.217 | 72 | 107 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.4E-11 | 72 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 138 | 182 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.2E-21 | 139 | 180 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MLAEGRQVCS PPPSKLPRLS GTDPTDGVVT MAAPSPLVLG LGLGLGGSGS DSSGSDAEAS 60 AATVREARPP SALTFMQRQE LEQQVLIYRY FAAGAPVPVH LVLPIWKSIA AASSFGPQSF 120 PSLTGLGSLC FDYRSSMEPE PGRCRRTDGK KWRCSRDVVP GHKYCERHVH RGRGRSRKPM 180 EASAAVAPTY LPVRPALHTV ATLATSAPSL SHLGFSSASE VLLAHTTTGT TRAT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 171 | 179 | GRGRSRKPM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK110934 | 0.0 | AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635359.1 | 1e-138 | growth-regulating factor 12 | ||||
Swissprot | Q6AWX7 | 1e-139 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A0D3FZ73 | 1e-167 | A0A0D3FZ73_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G22410.1 | 1e-168 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-37 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|