PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G21370.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 540aa MW: 58254.8 Da PI: 4.442

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G21370.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.9e-13	333	380	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++++P+ K++Ka+iL +++ Y+k+L+ OBART04G21370.2 333 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 380 5899*********************66......**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.5E-30	10	131	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.859	330	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.97E-15	333	384	No hit	No description
SuperFamily	SSF47459	2.09E-17	333	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-17	334	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-10	334	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-15	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG 60 PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKTIVC VPFIMHGVLE LGTTDPISED 120 PALVDRIAAS FWDTPPRAAF SSEAGDADIV VFEDLDHGNA AVEATTTTVP GEPHAVAGGE 180 VAECEPNADN DLEQITMDDI GELYSLCEEL DVVRPLDDDS SSWAVADPWS SFQLVPTSSP 240 APDQAPAAEA TDVDDVVVAA LDVSSIDGSC RPSPSSFVAW KRTADSDEVQ AVPLISGEPP 300 QKLLKKAVAG AGAWMNNGDS SAAAMTTQGS SIKNHVMSER RRREKLNEMF LILKSVVPSI 360 HKVDKASILA ETIAYLKELE KRVEELESSS QPSPCPLETR SRRKCHEITG KKVSAGAKRK 420 APAPEVASDD DTDGERRHCV SNVNVTIMDN KEVLLELQCQ WKELLMTRVF DAIKGVSLDV 480 LSVQASTSDG LLGLKIQAKV VISAANSDIG HIIVAWMQFA SSAAVEPGMI TEALRKAIAS

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG  60
PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKTIVC VPFIMHGVLE LGTTDPISED  120
PALVDRIAAS FWDTPPRAAF SSEAGDADIV VFEDLDHGNA AVEATTTTVP GEPHAVAGGE  180
VAECEPNADN DLEQITMDDI GELYSLCEEL DVVRPLDDDS SSWAVADPWS SFQLVPTSSP  240
APDQAPAAEA TDVDDVVVAA LDVSSIDGSC RPSPSSFVAW KRTADSDEVQ AVPLISGEPP  300
QKLLKKAVAG AGAWMNNGDS SAAAMTTQGS SIKNHVMSER RRREKLNEMF LILKSVVPSI  360
HKVDKASILA ETIAYLKELE KRVEELESSS QPSPCPLETR SRRKCHEITG KKVSAGAKRK  420
APAPEVASDD DTDGERRHCV SNVNVTIMDN KEVLLELQCQ WKELLMTRVF DAIKGVSLDV  480
LSVQASTSDG LLGLKIQAKV VISAANSDIG HIIVAWMQFA SSAAVEPGMI TEALRKAIAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	343	ERRRRE
2	339	344	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	OSU39860	0.0	U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880379.1	0.0	anthocyanin regulatory Lc protein isoform X2
Swissprot	P13526	1e-149	ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBL	A0A0D3FYU1	0.0	A0A0D3FYU1_9ORYZ; Uncharacterized protein
STRING	OBART04G21370.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-35	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Ludwig SR,Habera LF,Dellaporta SL,Wessler SR Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6 [PMID:2674946] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]