PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G21370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 521aa MW: 56248.4 Da PI: 4.4363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.5e-13 | 333 | 380 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++++P+ K++Ka+iL +++ Y+k+L+ OBART04G21370.1 333 KNHVMSERRRREKLNEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 380 5899***********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.4E-30 | 10 | 131 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.859 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.59E-15 | 333 | 384 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-17 | 333 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.0E-10 | 334 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-17 | 334 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-15 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MNLTADELVL QRSEQLRELY DSLLSGECGH RARRPVAALL PEDLGDTEWY YVVCMTYAFG 60 PGQGLPGKSF ASNEFVWLTN AQSADRKLFH RALIAKTIVC VPFIMHGVLE LGTTDPISED 120 PALVDRIAAS FWDTPPRAAF SSEAGDADIV VFEDLDHGNA AVEATTTTVP GEPHAVAGGE 180 VAECEPNADN DLEQITMDDI GELYSLCEEL DVVRPLDDDS SSWAVADPWS SFQLVPTSSP 240 APDQAPAAEA TDVDDVVVAA LDVSSIDGSC RPSPSSFVAW KRTADSDEVQ AVPLISGEPP 300 QKLLKKAVAG AGAWMNNGDS SAAAMTTQGS SIKNHVMSER RRREKLNEMF LILKSVVPSI 360 HKVDKASILA ETIAYLKELE KRVEELESSS QPSPCPLETR SRRKCHEITG KKVSAGAKRK 420 APAPEVASDD DTDGERRHCV SNVNVTIMDN KEVLLELQCQ WKELLMTRVF DAIKGVSLDV 480 LSVQASTSDG LLGLKIQAKF ASSAAVEPGM ITEALRKAIA S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 343 | ERRRRE |
2 | 339 | 344 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | OSU39860 | 0.0 | U39860.1 Oryza sativa transcriptional activator (Ra) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635227.1 | 0.0 | anthocyanin regulatory Lc protein isoform X4 | ||||
Swissprot | P13526 | 1e-153 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A0D3FYU0 | 0.0 | A0A0D3FYU0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G21370.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 3e-35 | bHLH family protein |
Publications ? help Back to Top | |||
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