PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G21010.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 546aa    MW: 56961.1 Da    PI: 6.2012
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G21010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05118135219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  OBART04G21010.1 118 VCKNCGKEFTSWEHFLEH 135
                      7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.962951IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.94E-62951No hitNo description
PROSITE profilePS501579.5362951IPR007087Zinc finger, C2H2
PfamPF139120.00453051IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-6112136No hitNo description
SMARTSM00355140117137IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141117144IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-8257280No hitNo description
SMARTSM003550.13258280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242258285IPR007087Zinc finger, C2H2
PfamPF139123.0E-9258282IPR007087Zinc finger, C2H2
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
SuperFamilySSF576677.71E-8366393No hitNo description
SMARTSM003553.7371393IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-11371394IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182371393IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MHHHGQMQPS PSSPRAPPPT AAQASGYKHF CRVCNKGFTC GSALGGHMRA HGVGDGDGLG  60
ADDDDDDDDD SLGDEAVRRA RGGADDPWNA GGPSSSGAAT HVYELRTNPN RVTRSRQVCK  120
NCGKEFTSWE HFLEHGKCSS GEDDADGEED PAPAAGWLKG KRSRRCKGTG VDLSPTPSAC  180
AAGEEEDLAN CLVLLSSSKV DQAGVTEAEQ PSSSSASKEH KRLITFMEPT TYVLDTVMAL  240
PPPAPAPQYV STVPRGMFEC KACKKVFSSH QALGGHRASH KKVKGCFAAK LESNAAEVAE  300
PSHHAEVADR SEDNPAKATS DARRNVHASM DGDGNAGTSD AAAELSMAIV PIEPPVAALA  360
AAPLKKKGKM HECSVCHRLF TSGQALGGHK RCHWLTSSSA DHTASVPPLA DDLVPLSFRP  420
MLDAPEPALD LSIAANPPLL ASAATVRPKV GGSSFHLDAP PPVYIPSSPA IPSQRNKATA  480
TTGSQNANDA VGLSTAAAED EADSTTVKRA RLSDLKDVSM AGETTPWLQV GIGSSSRGGA  540
DDNDKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363369LKKKGKM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0D3FYQ10.0A0A0D3FYQ1_9ORYZ; Uncharacterized protein
STRINGOBART04G21010.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.17e-21C2H2-like zinc finger protein