PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G20820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 214aa    MW: 22747.2 Da    PI: 5.3004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G20820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-1963112255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f+tae+Aa+a++ a+++++g
  OBART04G20820.1  63 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFDTAEMAARAHDVAALAIKG 112
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.35463120IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2263121IPR016177DNA-binding domain
PfamPF008474.1E-1363112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3363121IPR001471AP2/ERF domain
SMARTSM003801.5E-3763126IPR001471AP2/ERF domain
CDDcd000181.98E-3264122No hitNo description
PRINTSPR003672.6E-116475IPR001471AP2/ERF domain
PRINTSPR003672.6E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEQEQVISQE SNSCTCSSSS NDASSAACSS LNASSPSSVD SGSAGGGGGG KKRPRSDHLK  60
HPTYRGVRMR SWGKWVSEIR EPRKKSRIWL GTFDTAEMAA RAHDVAALAI KGRTAHLNFP  120
DLAHLLPRAA SASPKDVQAK SPDTCSVASA ASPQPPPPDA EADPDSTLFD LPDLLLDLRY  180
ETSSSLSCGA SWAVDDDVAG GVVFRLEEPM LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-19601201172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634439.14e-77ethylene-responsive transcription factor ERF038
SwissprotQ9ZQP34e-45ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A0D3FYN21e-153A0A0D3FYN2_9ORYZ; Uncharacterized protein
STRINGOBART04G20820.11e-154(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]