PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART04G20640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 33791.6 Da PI: 4.8782 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 139 | 190 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t+ eAa+a+++a+ +++g+ OBART04G20640.1 139 KYRGVRQRP-WGKFAAEIRDPKRRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 190 8********.**********96554..**************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 138 | 198 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 139 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.32E-29 | 139 | 198 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-22 | 139 | 198 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.144 | 139 | 197 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-37 | 139 | 203 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-13 | 140 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-13 | 179 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MDFPGDAEDF ALEFIREHLL GGDAPVLPPA AVPAAAAYPP TSSMFLPQQQ RGYAGLTPQE 60 YVVDSAPAAD QAAFRDDQPD PAADVMIMFG GERFPAVKPS SSSSPSLTVT VPPSSFGSWA 120 PAAVPAAAAT AAAVEDFRKY RGVRQRPWGK FAAEIRDPKR RGSRVWLGTY DTPVEAARAY 180 DRAAFRMRGA KAILNFPNEV GTRGAELWAT PPPTNKRKRQ PEDDTAAADD VEVIGVANKA 240 VKTEAPTSAY SSSSLSSMSR DTTATTSSTG TSTGSSEPTS FPVVTPSSWS WDQYWDGLPP 300 LSPLSPHPAL GFPQLTVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 138 | 202 | 4 | 68 | ATERF1 |
3gcc_A | 1e-26 | 138 | 202 | 4 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635244.1 | 0.0 | ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A0D3FYL4 | 0.0 | A0A0D3FYL4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PNK3 | 0.0 | I1PNK3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0177200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART04G20640.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-32 | ethylene responsive element binding factor 5 |