PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G16110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 43417.6 Da PI: 5.0774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.9 | 2.5e-29 | 87 | 228 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 p G++F+P+d e++ e+L++k++ + ++ + ++ v +i++++P++Lp +k + ++ +fF++ +++y +g+rk+r+ OBART04G16110.1 87 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEGVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 178 88**********99.99****998887887764443444777778**********.66778899*******************76776666554 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l OBART04G16110.1 179 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 228 4678************.99************996777889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.29E-34 | 70 | 247 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.473 | 86 | 247 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-12 | 87 | 228 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MAFRIDGQKI FTLSECDFGR NLTLPETLNV RPWIIAGGKV IATKIRNATQ LLSCKLGELV 60 PEAWRECPNC KCHIDNSDVT LQWPEFPDGV KFDPSDLEVL EHLERKINLG NPGPQGLIDH 120 FIPTLEGVEG ICYTHPENLP GIKLDGTSSH FFHRISNAYG SGQRKRRKIS HTGHAASDEN 180 IRWHKTGKSK QIYHNGVLKG WKKILVLYKG SKKNKIVQAN WVMHQYNLGV EEGGEDGELV 240 VSKVFYQLSS KQTGSPEMDS VTEEASDALT IRSDPITPIT NPPLPRCLMN SPCDTEQNGT 300 ISHDREGECS TSTLRPTVEP GNRAGCSAGA STTGDFDEDL LQRCEFPGDP VPTLDDTLPF 360 LYTDETDLFS WEDFQFGSQE SFGWVDGDHT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB630330 | 0.0 | AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653523.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
TrEMBL | A0A0D3FX25 | 0.0 | A0A0D3FX25_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G16110.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 6e-62 | NAC family protein |