PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G15980.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 216aa    MW: 23776.2 Da    PI: 3.6991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G15980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.91.2e-071365150
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkk 50
                     lp G+rF+P+d +++ +yL + + +      +  +v++ vd++ + P  +p +
  OBART04G15980.1 13 LPWGYRFRPSDRQIIANYLGPMAIHGAdslPQRGDVVEGVDVFATRPAAIPFE 65
                     689****************99976665475455578**************942 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-10465IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MASSAHMAAV LNLPWGYRFR PSDRQIIANY LGPMAIHGAD SLPQRGDVVE GVDVFATRPA  60
AIPFEPRRHE YRLNKSAAAF RRAYAQPNPK ANMDCVVREI YTKAVPPPTP PSGRSGDEEM  120
QEGSDYSVMD EDELVDYLLQ GFEDGNFDED QDQPAAAEDG DYSDEDQDQP AAAEDGDYSD  180
EDQDQPAAAE DGDYSDEDQD QPAAAEDGDY SDEDEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551890.0CR855189.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634860.18e-83NAC domain-containing protein 67-like
TrEMBLA0A0D3FX101e-152A0A0D3FX10_9ORYZ; Uncharacterized protein
STRINGOBART04G15980.11e-153(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231