PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G14990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 499aa MW: 53915.9 Da PI: 8.4813 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl OBART04G14990.1 14 KGPWTPEEDQKLLAYIEQHGHGCWRSLPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OBART04G14990.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-27 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.859 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.33E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.891 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPRRPSYSD SSALVPQMGG GNESFGVVLL EMLTGRRSMD KKRPAGFGYV FKGWIDPNST 180 SPAKLGTDLT VVVRSLEQDA LQGHREWVQE TKSWTASWCR PDLVICPLPT GWMWILEIEE 240 ERRCGADLVW ERRRSGGQRP ATGRGEEQWR GGSWGRLPLA LDVAGGGGVG MFVASCAAAT 300 GAALSATGHI LACLLLAGES RRDSSARGGL WKAAAIVAAF WKKSGAGSRR SRPPGSPVAA 360 AAAHGLDSPT STLSFSDSAA LATVLEAHGA TAAAARAAMQ PMQAYDEACK DQHWGDVDAA 420 DVGFPGAGAG FTGLLLDGSL NQIPRPAGRD AEADGEFQET EEEKNYWNSI LNLVNSSSAP 480 MSTAVVVPAS HAYSPAPDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288415 | 0.0 | AK288415.1 Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence. | |||
GenBank | AL606460 | 0.0 | AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635111.1 | 1e-84 | transcription factor MYB106 | ||||
Refseq | XP_021318372.1 | 4e-84 | transcription factor MYB16 | ||||
Refseq | XP_025824773.1 | 2e-84 | transcription factor MYB16-like | ||||
TrEMBL | A0A0D3FWN6 | 0.0 | A0A0D3FWN6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G14990.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5609 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-81 | myb domain protein 16 |