PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G12870.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 382aa    MW: 40761.1 Da    PI: 4.5245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G12870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-14133181355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h   Er RR++++++fe L  l+P++     +K +Ka+i+e +++YIk+Lq
  OBART04G12870.1 133 KMHVLTERERRKEMKNKFEILHALIPNL----PEKTDKATIVEATINYIKNLQ 181
                      579999*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-14133185No hitNo description
SuperFamilySSF474596.28E-16133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-16134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-11134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSQEGPNNHP QGTQETHDCP FTIATNTPLG STKMGYSDSR KFDENNTSSK PASPVVSSDV  60
VEIKETWENV VVADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG AREGCSGGNN  120
NDEVKNFAYA DHKMHVLTER ERRKEMKNKF EILHALIPNL PEKTDKATIV EATINYIKNL  180
QDKIHKMEML KVEREHAIAL AAAAAAATAT ATAAASADTA LQAPPPPSEE ENEEEHDSVV  240
AAATREMALA DMVHAWEQQQ EAAATGGSHG GHAVPPPPPP AASLQTWTGP NMTASLTGDD  300
GFITLSLPHQ GGQKNLVAGA VSVLERHHID VVTATVSASE QGDNLISLHC HLSPGSSSSQ  360
NLTPLDKFKL AMSELMLWVI SV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072680.0AK107268.1 Oryza sativa Japonica Group cDNA clone:002-125-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635110.11e-137transcription factor bHLH95
TrEMBLA0A0D3FVY50.0A0A0D3FVY5_9ORYZ; Uncharacterized protein
STRINGOBART04G12870.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-17bHLH family protein