PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G12180.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 385aa    MW: 43385.9 Da    PI: 5.5172
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G12180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP45.81e-141131443871
          E2F_TDP  38 dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +v  ++RRiYDi+NVLe+ +liekk kn+irw+g
  OBART04G12180.1 113 QV--RKRRIYDITNVLEGTGLIEKKLKNRIRWRG 144
                      34..8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013727.9E-879144IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-1397144IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467858.03E-10111145IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-13113145IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd146604.52E-29154233No hitNo description
SuperFamilySSF1440741.54E-24155234No hitNo description
PfamPF164217.6E-20159233IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTRHRHLHDP PPLLRLLRER LPPLLCERRP QPRLRRLSSL KRKTPCGESE AAESSERMMT  60
SPGFTEGVGS PLMTPVSGKS SRTTKSMAKF NKAGPQTPIS NAGKFIYGFQ QKQVRKRRIY  120
DITNVLEGTG LIEKKLKNRI RWRGSDDSGT NLDSDISCLK TEVENLYIQE QALDRSISEI  180
REKMEELTED ESNHRWLFVT EDDIKGLPCF QNEALIAIKG PRGTTVEVPD PDELLPQKKL  240
SDEHPYYIIS QYKKMEELGE TATPPRHASV VEPPSIATEA GHSSKQTMPL NVQQDIQETP  300
ELNASRAFGR MKKITPSDVD TDADYWLLTD DDISITHMWT TASEMQWDQI DTNDFLAEEI  360
SDTPCALNQP SAAASEPTGV GFNHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114136RKRRIYDITNVLEGTGLIEKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0675810.0AK067581.1 Oryza sativa Japonica Group cDNA clone:J013113N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637107.10.0transcription factor E2FA isoform X2
TrEMBLA0A0D3FVQ30.0A0A0D3FVQ3_9ORYZ; Uncharacterized protein
STRINGOBART04G12180.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.16e-66E2F transcription factor 3