PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G11100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 298aa    MW: 31208.7 Da    PI: 10.4973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G11100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.35.9e-2196145255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  OBART04G11100.1  96 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 145
                      7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-56682IPR001471AP2/ERF domain
PROSITE profilePS510329.2426799IPR001471AP2/ERF domain
PRINTSPR003671.2E-116879IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3395154IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2296154IPR016177DNA-binding domain
PROSITE profilePS5103224.71196153IPR001471AP2/ERF domain
CDDcd000181.39E-2996154No hitNo description
SMARTSM003804.8E-3896159IPR001471AP2/ERF domain
PfamPF008478.2E-1496145IPR001471AP2/ERF domain
PRINTSPR003671.2E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVTALAHVIR AAPDLHLPHH PSSSASAAAH PQQASSFYPT AAAAASSPSD QLAAAAAAAE  60
EQGRRRHYRG VRQRPWGKWA AGDKGPEEGG EGRRRHYRGV RQRPWGKWAA EIRDPKKAAR  120
VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL NFPERVQGRT DLGFLVTRGI PPAATHGGGY  180
YPSSSPAAGA CPPPRQQQTV VPYPDLMRYA QLLQGGVGGS YMPFGGAATM SSSTVSSSSA  240
PQILDFSTQQ LIRAGPPSPM PSSGSGSATA AASSTTSASS PGAWPYGGSE RKKKDSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2795157467ATERF1
3gcc_A6e-2795157467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551110.0CR855111.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0209H04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636603.11e-135ethylene-responsive transcription factor ERF113
TrEMBLA0A0D3FVB70.0A0A0D3FVB7_9ORYZ; Uncharacterized protein
STRINGOBART04G11100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-22related to AP2 6l