PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G10420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 82aa    MW: 8570.06 Da    PI: 8.926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G10420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.4e-1027512044
                     HHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF 20 ilKKAeELSvLCdaevaviifsstg 44
                     +lKKAeEL vLCda v  +++s +g
  OBART04G10420.1 27 LLKKAEELAVLCDAHVGFVVLSCSG 51
                     8********************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-82466IPR002100Transcription factor, MADS-box
PfamPF003192.6E-92651IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.9232751IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MAAARGCLAS RAYIRGRAAH LRASARLLKK AEELAVLCDA HVGFVVLSCS GDDANPHHFA  60
APATYAPILS LPLPLLPPNL LG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550975e-85CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880634.12e-18MADS-box transcription factor 33-like isoform X3
TrEMBLA0A0D3FV444e-50A0A0D3FV44_9ORYZ; Uncharacterized protein
STRINGOBART04G10420.17e-51(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117