PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G10380.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 194aa MW: 20587.3 Da PI: 5.7536

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G10380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37	6e-12	78	158	4	89
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grse 89 ++ +s+v ++v+p++fa + ++ t + +grsW +++ ++++ l++GW++F+ +n+L+ gD +vF+l g + OBART04G10380.1 78 IMCKSHVQPPFQVVVPRSFAPLL---PSRT-TPATLSWRGRSWGMRF--TGGRLIQRLEAGWRGFAVDNDLRLGDGCVFELLvGGGG 158 677899999999******433...3333.44446789****..88888899*********************5423222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-15	72	171	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.7E-15	72	172	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.06E-13	73	171	No hit	No description
PROSITE profile	PS50863	12.492	75	173	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-9	76	158	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASDPTELRC SSPESSGDAG AEDPAAVDAA EESGGEGGSG HIAAGTEAAP PRPPEPEPEK 60 VARHGVLPLL GKPYFTCIMC KSHVQPPFQV VVPRSFAPLL PSRTTPATLS WRGRSWGMRF 120 TGGRLIQRLE AGWRGFAVDN DLRLGDGCVF ELLVGGGGEQ ERVEFRVQVL RAEIPARIRG 180 RAGGYTSATP IVID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119999	0.0	AK119999.1 Oryza sativa Japonica Group cDNA clone:002-184-H05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635251.1	1e-138	B3 domain-containing protein Os04g0386900
Swissprot	Q7XLP4	1e-139	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	I1P630	1e-137	I1P630_ORYGL; Uncharacterized protein
STRING	ORGLA02G0343600.1	1e-137	(Oryza glaberrima)
STRING	ORGLA04G0074500.1	1e-137	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]