PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G10000.4

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 316aa MW: 35933.2 Da PI: 10.177

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G10000.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1.1e-10	108	182	18	98
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p + a+++++++ + +l+l+ ++ + ++k+ r g+ ++t+GWk+F a gL+ g++v+F++++ + + +v+v++ OBART04G10000.4 108 VPITLATAYKMQH--GDKLKLQISHDLKIKIKI--REAAGTLYMTTGWKQFIYATGLRIGETVLFRMSS--CSKARVMVLN 182 5777788887774..44899***********..*****************************654..4444776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.629	91	184	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.9E-12	98	184	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-11	104	184	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.7E-8	107	182	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW 60 GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRPVPI TLATAYKMQH 120 GDKLKLQISH DLKIKIKIRE AAGTLYMTTG WKQFIYATGL RIGETVLFRM SSCSKARVMV 180 LNRKGFIRCP IRTTSKSSSV QKKSLPATNQ AIKTRTFQHG STNNSRTGTN KRALDDMSFC 240 HKTTLTAELR SYIKDIAYSL EESNKFYIVR MNRMFMEQNR VVKFLKTYPS PYAHTYHLTF 300 TFVAQYFAKE FSKKYI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069457	3e-58	AK069457.1 Oryza sativa Japonica Group cDNA clone:J023019M11, full insert sequence.
GenBank	AK071912	3e-58	AK071912.1 Oryza sativa Japonica Group cDNA clone:J013063J16, full insert sequence.
GenBank	AK101795	3e-58	AK101795.1 Oryza sativa Japonica Group cDNA clone:J033066B14, full insert sequence.
GenBank	AK103261	3e-58	AK103261.1 Oryza sativa Japonica Group cDNA clone:J033124D08, full insert sequence.
GenBank	AL607000	3e-58	AL607000.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence.
GenBank	AL662977	3e-58	AL662977.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence.
GenBank	AP014960	3e-58	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	3e-58	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855092	3e-58	CR855092.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3FV00	0.0	A0A0D3FV00_9ORYZ; Uncharacterized protein
STRING	OBART04G10000.1	1e-119	(Oryza barthii)