PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G10000.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 339aa    MW: 38715.4 Da    PI: 9.8136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G10000.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.2e-101312051898
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +p + a+++++++  + +l+l+ ++  + ++k+  r   g+ ++t+GWk+F  a gL+ g++v+F++++  + + +v+v++
  OBART04G10000.3 131 VPITLATAYKMQH--GDKLKLQISHDLKIKIKI--REAAGTLYMTTGWKQFIYATGLRIGETVLFRMSS--CSKARVMVLN 205
                      6777788887774..4589**************..*******************************654..4444776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.573114207IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-11118207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-12123207IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-8131205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW  60
GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRMSTA EWYELQMKES  120
KLCDMFDDVP VPITLATAYK MQHGDKLKLQ ISHDLKIKIK IREAAGTLYM TTGWKQFIYA  180
TGLRIGETVL FRMSSCSKAR VMVLNRKGFI RCPIRTTSKS SSVQKKSLPA TNQAIKTRTF  240
QHGSTNNSRT GTNKRALDDM SFCHKTTLTA ELRSYIKDIA YSLEESNKFY IVRMNRMFME  300
QNRVVKFLKT YPSPYAHTYH LTFTFVAQYF AKEFSKKYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694574e-58AK069457.1 Oryza sativa Japonica Group cDNA clone:J023019M11, full insert sequence.
GenBankAK0719124e-58AK071912.1 Oryza sativa Japonica Group cDNA clone:J013063J16, full insert sequence.
GenBankAK1017954e-58AK101795.1 Oryza sativa Japonica Group cDNA clone:J033066B14, full insert sequence.
GenBankAK1032614e-58AK103261.1 Oryza sativa Japonica Group cDNA clone:J033124D08, full insert sequence.
GenBankAL6070004e-58AL607000.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence.
GenBankAL6629774e-58AL662977.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence.
GenBankAP0149604e-58AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-58CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550924e-58CR855092.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FUZ90.0A0A0D3FUZ9_9ORYZ; Uncharacterized protein
STRINGOBART04G10000.10.0(Oryza barthii)