PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G10000.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 344aa    MW: 39054.8 Da    PI: 10.7741
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G10000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12e-101612341998
                      -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      p + a+++++++  + +l+l+ ++  + ++k+  r   g+ ++t+GWk+F  a gL+ g++v+F++++  + + +v+v++
  OBART04G10000.2 161 PITLATAYKMQH--GDKLKLQISHDLKIKIKI--REAAGTLYMTTGWKQFIYATGLRIGETVLFRMSS--CSKARVMVLN 234
                      556677777664..44899999999*******..*******************************654..4444776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-11159236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.46160236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-11160236IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-7161234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MQCRGASRAS AEVGHRVEDL WEVAEPQLSP SEKLNSCFED IAVASFHRPL GSQECLDDVW  60
GQETNLGHAG HYSIWKNGNH SRCDMYDVKP KFVSIGSVGS AFSGTRVIID KGARDATVAL  120
RWGGARGRRQ RRERERESVG GTTRRDRRPR RLGLGVVRPV PITLATAYKM QHGDKLKLQI  180
SHDLKIKIKI REAAGTLYMT TGWKQFIYAT GLRIGETVLF RMSSCSKARV MVLNRKGFIR  240
CPIRTTSKSS SVQKKSLPAT NQAIKTRTFQ HGSTNNSRTG TNKRALDDMS FCHKTTLTAE  300
LRSYIKDIAY SLEESNKFYI VRMNRMFMEQ NRVYFAKEFS KKYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694574e-58AK069457.1 Oryza sativa Japonica Group cDNA clone:J023019M11, full insert sequence.
GenBankAK0719124e-58AK071912.1 Oryza sativa Japonica Group cDNA clone:J013063J16, full insert sequence.
GenBankAK1017954e-58AK101795.1 Oryza sativa Japonica Group cDNA clone:J033066B14, full insert sequence.
GenBankAK1032614e-58AK103261.1 Oryza sativa Japonica Group cDNA clone:J033124D08, full insert sequence.
GenBankAL6070004e-58AL607000.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence.
GenBankAL6629774e-58AL662977.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21, complete sequence.
GenBankAP0149604e-58AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-58CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550924e-58CR855092.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0092E09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FUZ80.0A0A0D3FUZ8_9ORYZ; Uncharacterized protein
STRINGOBART04G10000.10.0(Oryza barthii)