PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G08410.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 326aa    MW: 36606.8 Da    PI: 4.9235
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G08410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.24.3e-09119165455
          G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      l Wtp L ++F++a+e LG + +      l +m+v+ + ++++  HLQk+Rl
  OBART04G08410.1 119 LMWTPHLQKKFLHALEILG-EGQ----ISLMIMDVDNIDRKQISTHLQKHRL 165
                      78****************5.542....34789*******************8 PP
2Response_reg31.31.1e-111598283
                     EEESSSHHHHHHHHHHHH.HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
     Response_reg  2 livdDeplvrellrqale.kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83
                     +++d+++  ++  r+++  + ++  v++++++ +al+ l+++   ++l+l D++m +m+G+e+lk  re ++++++i v+++++ 
  OBART04G08410.1 15 MVIDEDKCHADSTRSMICtQLNF-CVTVFTSPIKALDFLQNQAegVHLVLADVQMEEMNGFEFLKVARELHKSIQVISVGDKSTC 98
                     78999999999999887779999.***************999999**********************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.4E-121191IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-121292No hitNo description
PROSITE profilePS5011012.75113137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-81598IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.50E-91590No hitNo description
SuperFamilySSF466892.87E-10113169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-10114169IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-8119166IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAQNEGMPNG RLSAMVIDED KCHADSTRSM ICTQLNFCVT VFTSPIKALD FLQNQAEGVH  60
LVLADVQMEE MNGFEFLKVA RELHKSIQVI SVGDKSTCAN EMNSFPENQK DGTKRKYYLM  120
WTPHLQKKFL HALEILGEGQ ISLMIMDVDN IDRKQISTHL QKHRLQLKKK LSKASFTKGS  180
NEDTSNPSAK NHLTCRTMTL QPHPYTNQPA ETTMQIHSED IEHDDGYDAM RRALQDGTAF  240
DESKYSSDPF SNEDEDVVGD GYADKANAID SSGDHYQVAV VLTTPHNVEY TQEIMNKVTT  300
SDDVQVTRGG KATVSRLVDY SDSDDD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149601e-177AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-177CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691407.11e-120PREDICTED: two-component response regulator ORR29-like
SwissprotA2XS500.0ORR28_ORYSI; Two-component response regulator ORR28
TrEMBLA0A0D3FUH00.0A0A0D3FUH0_9ORYZ; Uncharacterized protein
STRINGOBART04G08410.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345