PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G08270.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 312aa    MW: 35105.8 Da    PI: 10.0524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G08270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.44e-16381171496
                      T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       + ++p kf++++  g++ +s + ++ ++ g+sW+v+l  +k +++++l++GW +F + +g+  gD+v+F+++g+  f  +++v
  OBART04G08270.1  38 TLHRIPDKFVRDYiTGENLNSNMAIILSPLGKSWRVEL--DKDQSGVFLGGGWLQFLSFHGISRGDVVIFRYEGNLVF--KISV 117
                      4558**********555567889999************..*******************************9986666..5555 PP
2B379.43.7e-25205299184
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvv 81 
                      ++k++++++vl++++l+l ++f+e++g+ +e+s+tl++ d+++            rsWev+   r+++++ y+l++GW++F+++ng+++gD++v
  OBART04G08270.1 205 WIKKEINEYVLERCILSLARTFCESIGLAEESSITLMMIDTTStqgdqggsssssRSWEVTG--RRYKDAcYLLGAGWRRFCEDNGVRSGDVCV 296
                      789*************************************99999*****************..9999999*********************** PP

                      EEE CS
               B3  82 Fkl 84 
                      F++
  OBART04G08270.1 297 FTV 299
                      *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.0725121IPR003340B3 DNA binding domain
SMARTSM010191.2E-828121IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-1739121IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1340113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1740122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-1541118No hitNo description
SuperFamilySSF1019361.33E-14201310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-17202310IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-14205300IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899205312IPR003340B3 DNA binding domain
SMARTSM010191.2E-4206310IPR003340B3 DNA binding domain
CDDcd100171.55E-7210298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAAAAAAAAR RGRRSSRFSC LLPSARCYDI QKRAGQQTLH RIPDKFVRDY ITGENLNSNM  60
AIILSPLGKS WRVELDKDQS GVFLGGGWLQ FLSFHGISRG DVVIFRYEGN LVFKISVFGP  120
NGRQKDFKAK GISIHQGTGE QQEAPSFSRR KCNNKKKSRF GEDDGNQQEM PCSRKGSGNK  180
GRTSDRETKR MRKTRSVYEI GPRSWIKKEI NEYVLERCIL SLARTFCESI GLAEESSITL  240
MMIDTTSTQG DQGGSSSSSR SWEVTGRRYK DACYLLGAGW RRFCEDNGVR SGDVCVFTVL  300
DTTLWRVDIE RC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-159AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-159AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-159CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551081e-159CR855108.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0111I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881011.10.0putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS750.0Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0D3FUF10.0A0A0D3FUF1_9ORYZ; Uncharacterized protein
STRINGOBART04G08270.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.13e-15B3 family protein