PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G07410.6

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 296aa MW: 33858.2 Da PI: 10.2572

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G07410.6	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.8	5e-10	97	168	17	94
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 lp + +++++g +k ltl +++++ +v+l +k ++++++ kGWk+Fv+ gL++g + F++++ s+ + OBART04G07410.6 97 ALPPEIVASCNGY--HGKYLTLVTRHNKPVNVRL--EKIGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTL--DL 168 5788888888666..3568*************..*****************************7554444..44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12569	1.9E-11	30	100	IPR021183	N-terminal acetyltransferase A, auxiliary subunit
PROSITE profile	PS50863	8.882	81	174	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.2E-11	97	174	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.6E-7	97	168	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.06E-14	97	174	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEQIHGARRP SANLLPPFPA TDVEGALTFK AVHKCLGLYS ENGQYCTNVD RLCTLYISLK 60 KEYGWSSAVK RMPLDFLGGE KFQEAADNYV RPLLTKALPP EIVASCNGYH GKYLTLVTRH 120 NKPVNVRLEK IGQSFYICKG WKKFVELTGL RVGQCIRFSV SSPSTLDLLV LDKHGVPKLP 180 MPASSEEHLR FKAKRSIHQN SKVMVQSHRL LSITGSTNQR TPNPSLQMIS KRRYWEPFNQ 240 HDPSQIDRPL LQPKKRMDKF RPQQWHKAPH SMHFPFLRLP IEEQPSISSE YAINVV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068192	0.0	AK068192.1 Oryza sativa Japonica Group cDNA clone:J013135O21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7XFU9	3e-46	Y1030_ORYSJ; B3 domain-containing protein Os10g0323000
TrEMBL	A0A0D3FU55	0.0	A0A0D3FU55_9ORYZ; Uncharacterized protein
STRING	OBART04G07410.1	1e-144	(Oryza barthii)

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]