PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G07410.5
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 314aa    MW: 35774.4 Da    PI: 10.1414
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G07410.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-101151861794
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       lp + +++++g    +k ltl +++++  +v+l  +k ++++++ kGWk+Fv+  gL++g  + F++++ s+    +
  OBART04G07410.5 115 ALPPEIVASCNGY--HGKYLTLVTRHNKPVNVRL--EKIGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTL--DL 186
                      6888888888666..4568***************..*******************************7554444..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF125697.8E-2031115IPR021183N-terminal acetyltransferase A, auxiliary subunit
SuperFamilySSF1019363.92E-14106192IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-11114192IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-7115186IPR003340B3 DNA binding domain
PROSITE profilePS508638.713132192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQIHGARRP SANLLPPFPA TDVEGALTFK AVHKCLGLYS ENGQYCTNVD RLCTLYISLK  60
KEYGWSSAVK RMPLDFLGGE KFQEAADNYV RPLLTKGVPS LFSDLSPLYE QPGKALPPEI  120
VASCNGYHGK YLTLVTRHNK PVNVRLEKIG QSFYICKGWK KFVELTGLRV GQCIRFSVSS  180
PSTLDLLVLD KHGVPKLPMP ASSEEHLRFK AKRSIHQNSK VMVQSHRLLS ITGSTNQRTP  240
NPSLQMISKR RYWEPFNQHD PSQIDRPLLQ PKKRMDKFRP QQWHKAPHSM HFPFLRLPIE  300
EQPSISSEYA INVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681920.0AK068192.1 Oryza sativa Japonica Group cDNA clone:J013135O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FU540.0A0A0D3FU54_9ORYZ; Uncharacterized protein
STRINGOBART04G07410.11e-144(Oryza barthii)