PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G07410.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 341aa    MW: 38921 Da    PI: 9.9119
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G07410.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.3e-101422131794
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       lp + +++++g    +k ltl +++++  +v+l  +k ++++++ kGWk+Fv+  gL++g  + F++++ s+    +
  OBART04G07410.3 142 ALPPEIVASCNGY--HGKYLTLVTRHNKPVNVRL--EKIGQSFYICKGWKKFVELTGLRVGQCIRFSVSSPSTL--DL 213
                      6888888888666..4568***************..*******************************7554444..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF125691.5E-2052142IPR021183N-terminal acetyltransferase A, auxiliary subunit
SuperFamilySSF1019364.71E-14133219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-11141219IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-7142213IPR003340B3 DNA binding domain
PROSITE profilePS508638.713159219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEQIHGARRP SANLLPPFPA TDVEGALTFK GLYAPLDIIS DRAIDVSSYR CNIWYFIAVH  60
KCLGLYSENG QYCTNVDRLC TLYISLKKEY GWSSAVKRMP LDFLGGEKFQ EAADNYVRPL  120
LTKGVPSLFS DLSPLYEQPG KALPPEIVAS CNGYHGKYLT LVTRHNKPVN VRLEKIGQSF  180
YICKGWKKFV ELTGLRVGQC IRFSVSSPST LDLLVLDKHG VPKLPMPASS EEHLRFKAKR  240
SIHQNSKVMV QSHRLLSITG STNQRTPNPS LQMISKRRYW EPFNQHDPSQ IDRPLLQPKK  300
RMDKFRPQQW HKAPHSMHFP FLRLPIEEQP SISSEYAINV V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681920.0AK068192.1 Oryza sativa Japonica Group cDNA clone:J013135O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FU520.0A0A0D3FU52_9ORYZ; Uncharacterized protein
STRINGOBART04G07410.11e-143(Oryza barthii)