PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G05450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 128aa    MW: 14246.7 Da    PI: 7.5129
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G05450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.72.2e-211061155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s+y+GVr+++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  OBART04G05450.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61
                     89********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-301069No hitNo description
SuperFamilySSF541713.6E-241069IPR016177DNA-binding domain
PfamPF008471.1E-151061IPR001471AP2/ERF domain
PROSITE profilePS5103224.5131169IPR001471AP2/ERF domain
SMARTSM003803.6E-361175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321169IPR001471AP2/ERF domain
PRINTSPR003673.5E-121223IPR001471AP2/ERF domain
PRINTSPR003673.5E-123551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK  60
GAMAVLNFPG RTSSTGSSSS SSSTPPAPVT TSRHRADTTE KVELVYLDDK VLDELLAEDY  120
SYRNNNNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-291011113114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1077450.0AK107745.1 Oryza sativa Japonica Group cDNA clone:002-132-H03, full insert sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankBX8426020.0BX842602.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1234D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635372.12e-88ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0D3FTG84e-88A0A0D3FTG8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZHY14e-88A0A0D9ZHY1_9ORYZ; Uncharacterized protein
TrEMBLI1PJP24e-88I1PJP2_ORYGL; Uncharacterized protein
STRINGOGLUM04G04620.16e-89(Oryza glumipatula)
STRINGORGLA04G0041100.16e-89(Oryza glaberrima)
STRINGOBART04G05450.16e-89(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-23ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]