PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G03050.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 426aa    MW: 46426.6 Da    PI: 6.4518
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G03050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.31.2e-06292349562
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      +r +r   NR +A++s ++K + + eL++k ++L++e ++L  ++  ++ +  +l s+
  OBART04G03050.1 292 RRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTLGAQVTVMQRNNNELVSQ 349
                      5789999********************************9988877766666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-12288352IPR004827Basic-leucine zipper domain
PfamPF077163.1E-5289338IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.979290353IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.46E-9292348No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-7292349No hitNo description
CDDcd147035.73E-19293344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEGEPSRRLS LLDRCDDGSE DPVVPPRVPT ILNLASHHRL DRSKFLPLIH PAPARFISST  60
GSSFPPYSEP PPSAPMLEVG SGFGLEDLYS FFPNHFFSME SISLPPCDVV DVPPVIPLAL  120
RSGRSNQGLP SKLPLIEGHR RSHSDIPFGY SQEHPQMPPV ASVKPEVTTI EGHQLEDVAA  180
AALKDMGIQA WSPSGSIDKE VKSSGAGSTT HHCRSLSVDS FMMGNLNFGV VGQQMSSPPL  240
LTTEVNVGGG EPIGSTASPF AAELANVKFT EDEKKKIVMD KSLSEIVLTD PRRVKRILNN  300
RASATKSKEK KMKHVGELQR KLQVLQSETT TLGAQVTVMQ RNNNELVSQN NELKTRLQAM  360
DQLAQLGDAL TSILAAEAQH LRAVVSEISD PNLPSGPHQQ LSSDMDQLQQ LLTQRQTSQI  420
QQNQPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550530.0CR855053.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0101K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635275.10.0uncharacterized protein LOC107275813
TrEMBLA0A0D3FSP80.0A0A0D3FSP8_9ORYZ; Uncharacterized protein
STRINGOBART04G03030.10.0(Oryza barthii)
STRINGOBART04G03050.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147931112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.11e-42bZIP family protein