PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G40390.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 868aa MW: 96619.1 Da PI: 4.7497 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3e-08 | 717 | 758 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ OBART03G40390.2 717 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 758 569*******************.*********.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-10 | 708 | 764 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 3.6E-25 | 710 | 791 | No hit | No description |
SMART | SM00717 | 7.5E-9 | 716 | 764 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-5 | 717 | 759 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-6 | 719 | 759 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MIDDEADFGN ITDATEGQAA AKFRPKARAK PRKTSLPSRS LAPHPTVEST DENVETLNKD 60 STSHEQSVDK KAASLGCHGN EADGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV 120 FASVHKVSQN EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE 180 EERVAKFQPK FRVKTSKAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR 240 HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE 300 TIDAACVATP EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA 360 TVDLDSHAEM VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP 420 TDTNSETSNS NHFCKDIATG ESLSNLLQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY 480 DHVIEQEPER DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE 540 YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK 600 DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS VTHLRLLQEA KERIKASFVG 660 KEIPSGPSSS NHSTSQFGDM DDEYNEQDNW DNDRTENHVV ENTTKLNYHS YMNRQTRAKW 720 SKSETDKFYE GLQQFGSDFA MIQHLFPDKS RNQVRQKFKA EEKKHPMQVH DAIMHRSRDN 780 LYFKEVIKKL NIEDVQPDIN NTYEQEGTSN EEDPGNKNIP GGLINEEEEN GLDWSDKELD 840 MHRSEVEEKE HVSTNDDDDD LGDVFDWY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633004.1 | 0.0 | uncharacterized protein LOC9267825 | ||||
TrEMBL | A0A0D3FR65 | 0.0 | A0A0D3FR65_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G40390.2 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2595 | 29 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 4e-36 | MYB_related family protein |