PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G40390.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 849aa    MW: 94398.5 Da    PI: 4.6859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G40390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08698739144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  OBART03G40390.1 698 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 739
                      569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.04E-10689745IPR009057Homeodomain-like
PfamPF159633.5E-25691772No hitNo description
SMARTSM007177.5E-9697745IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-5698740IPR009057Homeodomain-like
CDDcd001671.19E-6700740No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MIDDEADFGN ITDATEGQAA AKFRPKARAK PRKTSLPSRS LAPHPTVEST DENVETLNKD  60
STSHEQSVDK KAASLGCHGN EADGNACASG GILDTPSEDV VTVSLGLVNN PDVALDSSTV  120
FASVHKVSQN EENNDDLSHV ATHKESMVVS DTQAPPTCCS AKTIDDLADF EGLCDDTHVE  180
EERVAKFQPK FRVKTSKAAS KSQRTNQKAG VSTVDVVSQN KEDGKDQAGC NDKQLHSPTR  240
HQESVQISYS QAHLGTHNST IDDVANSDSI MEEPAQEEMA AKFQPRLRPK AGGASPGVAE  300
TIDAACVATP EFGVSSADVV SQDTEEDSHR EGLSDGSCQK YIDEEAITTS GTGPPQDLDA  360
TVDLDSHAEM VNPHPDGSPL IIGEPSAETT VKFQPYVRRK KGKGKSVSFV PPNVSHAHTP  420
TDTNSETSNS NHFCKDIATG ESLSNLLQQA SEKICISGEH HPDDQECNDP ENQYHEGEPY  480
DHVIEQEPER DVRETGTPMI LRNRGKLQKD GIPEHTADDI MDEDFGEPPS DEQDNDSGDE  540
YTARGKQKGR RKSREKNINK EPSRGTKRTS GDSTIEESQK QKLQKNKSKT SSRGQKKTSK  600
DSSVEQPEKK LTHRIRRKRM EEVKTLLETP DHEIDRMKLS GKEIPSGPSS SNHSTSQFGD  660
MDDEYNEQDN WDNDRTENHV VENTTKLNYH SYMNRQTRAK WSKSETDKFY EGLQQFGSDF  720
AMIQHLFPDK SRNQVRQKFK AEEKKHPMQV HDAIMHRSRD NLYFKEVIKK LNIEDVQPDI  780
NNTYEQEGTS NEEDPGNKNI PGGLINEEEE NGLDWSDKEL DMHRSEVEEK EHVSTNDDDD  840
DLGDVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0D3FR640.0A0A0D3FR64_9ORYZ; Uncharacterized protein
STRINGOBART03G40390.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-33MYB_related family protein