PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G39800.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 356aa MW: 37397 Da PI: 4.4676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G39800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.8	6.7e-13	6	143	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy.. 82 +G+ F+P+d++l + yL+ + +++ +++ ++ +d+y++ P +L + + +++ + wy F++ + ++g rk r++ g OBART03G39800.1 6 KGLVFSPSDDQLTDGYLRSYLVRTSlddlpSAATSYFHVADVYSAPPDQLVAglapapgTGDGDGRVWYVFTPVRVLGSRGARKARTVGGGGec 99 6999*************998888667643333459999******7456776654455778****************87765346 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyr 127 W+a g k+v+ +++ g + + + k + +k W+m e++ OBART03G39800.1 100 WHAEGGPKDVKG--SAAGGKLQKFSYKiKTASGAVVKPGWLMVEFS 143 ******87..66667777788873344555579*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.722	4	158	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-22	4	158	IPR003441	NAC domain
Pfam	PF02365	3.7E-8	7	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA 60 PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGGECW HAEGGPKDVK GSAAGGKLQK 120 FSYKIKTASG AVVKPGWLMV EFSFPGSDHL ALCKVYRSPR TSRYGAPSPP SSAASSPSRA 180 APPPVSSTSG RKRKAEEESD HPEAPASSAP RRTLPAPEQH VDVDAAAASE PDQGGYLSTD 240 QLDSVAAFVQ EHEGDEEFYK SLGFDERSDP QCWTNFFLSA LEEFGPAPET DAAAVAVAAV 300 EPGPCPEYEE HDDTATTAAS SHAYDSATAE LVNLSDKEFY DIIFSGDQQG GAAVAG

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MAEIGKGLVF SPSDDQLTDG YLRSYLVRTS LDDLPSAATS YFHVADVYSA PPDQLVAGLA  60
PAPGTGDGDG RVWYVFTPVR VLGSRGARKA RTVGGGGECW HAEGGPKDVK GSAAGGKLQK  120
FSYKIKTASG AVVKPGWLMV EFSFPGSDHL ALCKVYRSPR TSRYGAPSPP SSAASSPSRA  180
APPPVSSTSG RKRKAEEESD HPEAPASSAP RRTLPAPEQH VDVDAAAASE PDQGGYLSTD  240
QLDSVAAFVQ EHEGDEEFYK SLGFDERSDP QCWTNFFLSA LEEFGPAPET DAAAVAVAAV  300
EPGPCPEYEE HDDTATTAAS SHAYDSATAE LVNLSDKEFY DIIFSGDQQG GAAVAG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC133339	0.0	AC133339.3 Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence.
GenBank	AC133778	0.0	AC133778.4 Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3FQZ3	0.0	A0A0D3FQZ3_9ORYZ; Uncharacterized protein
STRING	OBART03G39800.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6280	15	45