PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G39570.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 246aa    MW: 26370.1 Da    PI: 3.9504
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G39570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.3e-08955148
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                     l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L 
  OBART03G39570.1  9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELV 55
                     579************************998.88*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-177100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP  60
APGTHGSSSV WLGWCMTEYG LDDDAIDGAD KQVLCKVYRS PRAVCAEART AAAAKSADSP  120
CSGSKRKADD GADHPEAPPS ARPRQEEAGS EHGEQPAILP ELDLDALLSA PMDDSLGVEF  180
DTVTTEQYMR YLMNDEPLPS APTMEVAGGG DEFIETTNGP CMGEEEIIQR LAAGETLDDI  240
LGTNPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.11e-106NAC domain-containing protein 71-like
RefseqXP_015629670.11e-106NAC domain-containing protein 71-like
TrEMBLA0A0D3FQW31e-179A0A0D3FQW3_9ORYZ; Uncharacterized protein
STRINGOBART03G39570.11e-180(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.17e-07NAC domain containing protein 80