PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G38490.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 340aa    MW: 37516.4 Da    PI: 10.2086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G38490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.53.7e-251272585128
              NAM   5 frFhPtdeelvveyLkkkvegkk.leleev.ikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr...atksgyWkatgkdk 90 
                      +rF Ptd+el+ ++Lk+k + ++ ++++ + ik++d++k++  +L+      k+ +  wy Fs+r++ +++g r+ r   +t+ gyWk+   + 
  OBART03G38490.1 127 LRFTPTDQELIIHFLKPKYNLRDaMPTNIIvIKQLDVCKLNLDELHGdlgLGKSLDGAWYVFSPRSRYKERGVRPARgikTTAVGYWKSNSGEA 220
                      69****************9988875554445**************9534322334459*****************996534779********** PP

              NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v++ +ge++g  ++L++  g++p+g+ t+W m+eyr+
  OBART03G38490.1 221 DVVDDDGEVIGRVNSLTLALGHQPRGKATHWRMKEYRI 258
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.479123296IPR003441NAC domain
SuperFamilySSF1019411.31E-29127295IPR003441NAC domain
PfamPF023657.9E-14127258IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAPVHSSPL ATTSGSNHAV VPDAPPQEPA KRRRRNTAAA ATARRGRGRP RGATASSAHS  60
APPPPQQQQP TTSAPAITAQ RNDDVNQEDD NQSSKNSAEE AVVVAGGEPP LFPDTAMSAM  120
RIGRFPLRFT PTDQELIIHF LKPKYNLRDA MPTNIIVIKQ LDVCKLNLDE LHGDLGLGKS  180
LDGAWYVFSP RSRYKERGVR PARGIKTTAV GYWKSNSGEA DVVDDDGEVI GRVNSLTLAL  240
GHQPRGKATH WRMKEYRIPH LLRMKVVKLK LNSRGGTYKR TAYRLDEWVL CKLYHSFAYK  300
QKGKCKVHEE GSKSDRGVQD LSIDDDRKTC DIEANKPNGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-1812730221171NO APICAL MERISTEM PROTEIN
1ut4_B6e-1812730221171NO APICAL MERISTEM PROTEIN
1ut7_A6e-1812730221171NO APICAL MERISTEM PROTEIN
1ut7_B6e-1812730221171NO APICAL MERISTEM PROTEIN
3swm_A7e-1812730224174NAC domain-containing protein 19
3swm_B7e-1812730224174NAC domain-containing protein 19
3swm_C7e-1812730224174NAC domain-containing protein 19
3swm_D7e-1812730224174NAC domain-containing protein 19
3swp_A7e-1812730224174NAC domain-containing protein 19
3swp_B7e-1812730224174NAC domain-containing protein 19
3swp_C7e-1812730224174NAC domain-containing protein 19
3swp_D7e-1812730224174NAC domain-containing protein 19
4dul_A6e-1812730221171NAC domain-containing protein 19
4dul_B6e-1812730221171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375071e-168AC137507.3 Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence.
GenBankAP0149591e-168AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3FQJ30.0A0A0D3FQJ3_9ORYZ; Uncharacterized protein
STRINGOBART03G38490.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-23NAC domain containing protein 25