PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G33220.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 271aa    MW: 29013.7 Da    PI: 6.5108
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G33220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72e-15166202135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  OBART03G33220.1 166 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 202
                      **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-93368IPR010399Tify domain
PROSITE profilePS5132015.5483368IPR010399Tify domain
PfamPF062007.5E-133567IPR010399Tify domain
PROSITE profilePS5101713.49395137IPR010402CCT domain
PfamPF062035.5E-1695135IPR010402CCT domain
SMARTSM004013.4E-10160214IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-10164214No hitNo description
Gene3DG3DSA:3.30.50.107.1E-14165204IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.8E-13166202IPR000679Zinc finger, GATA-type
CDDcd002022.12E-13166212No hitNo description
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ  60
AVLLVLGGSD MPPGLVSMAV PTTFDEKSTT VAARRVASLM RFREKRKERC FDKKIRYSVR  120
KEVAQKMKRR KGQFAGRADF GDGSCSSAPC GSTANGEDDH IRESHCQNCG ISSRLTPAMR  180
RGPAGPRSLC NACGLMWANK GTLRSPLNAP KMTVQHPADL SKTGDTDDSK ANLCAEHNQT  240
TMKTDTEMVP EQEQKADVLP PTKEEDSMAT S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.10.0GATA transcription factor 19 isoform X1
SwissprotQ0DNU10.0GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0D3FNQ90.0A0A0D3FNQ9_9ORYZ; Uncharacterized protein
STRINGOBART03G33220.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-55ZIM-LIKE 2