PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G32870.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 593aa MW: 61966.8 Da PI: 7.6741

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G32870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.4e-24	213	257	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e OBART03G32870.1 213 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 257 79****************************************986 PP
2	QLQ	57.4	4.5e-20	147	183	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ OBART03G32870.1 147 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 183 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-11	147	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.0E-14	148	182	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.087	148	183	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.455	213	257	IPR014977	WRC domain
Pfam	PF08879	2.1E-20	214	256	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS SAAAAVAAAA 60 AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA AAGGAMPLYY 120 GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN SPVPHSLLIP 180 IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS RDAVADQKYC 240 ERHMNRGRHR SRKHVEGQSG HAAKAMPAAV AAAAASATQP SAPAAHSGGA VAGLAINHQH 300 QRMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG SLFPFSKQHN 360 PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSAVSLQHF VDWPRTPAQG 420 ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE YSPIGLGFAA 480 NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LLESLNLLND GWDSSSGFDS 540 SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI RLV

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MAAVDGGGGG ELGGGGLLGS RLMKHGRGNA GDQEHGWRPP AKQARGGDAS SAAAAVAAAA  60
AVSEAVKVAA PFLLGASCSP GHGGEQMLSF SSSASSCSSG GGGAAVAAAA AAGGAMPLYY  120
GTPASCSGLS SVSLSSSMQG AMARVRGPFT PSQWIELEHQ ALIYKYLAAN SPVPHSLLIP  180
IRRSLTSPYS PAYFGSSTLG WGSFQLGYSG SADPEPGRCR RTDGKKWRCS RDAVADQKYC  240
ERHMNRGRHR SRKHVEGQSG HAAKAMPAAV AAAAASATQP SAPAAHSGGA VAGLAINHQH  300
QRMKNYAANT ANPCSLQYSR DLANKHNESE QVQDSDSLSM LTSISTRNTG SLFPFSKQHN  360
PFEVSNSRPD FGLVSPDSLM SSPHSSLENV NLLTSQSLNE QQSAVSLQHF VDWPRTPAQG  420
ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLSRE YSPIGLGFAA  480
NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNMEARNC LLESLNLLND GWDSSSGFDS  540
SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGNSNLRDDL GSVVVNHPSI RLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073578	0.0	AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015628630.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A0D3FNL5	0.0	A0A0D3FNL5_9ORYZ; Uncharacterized protein
STRING	OBART03G32870.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	7e-54	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]