PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART03G31290.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 385aa MW: 41108.4 Da PI: 7.6521

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G31290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	157	1.1e-48	108	271	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ OBART03G31290.1 108 AAARKDRHSKISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQQQqhsnp 199 589************************************************************..666668766666666663333344567 PP TCP 89 ........................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarert+ek+r+++++ OBART03G31290.1 200 adrgggagdhkgaahghsdgkkpaKPRRAAANPKPPRRLANAHPVPDKESRAKARERARERTKEKNRMRWVT 271 88899999999999*****77777777************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-44	110	267	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.132	111	169	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	12.264	247	264	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA TIASPVPAMH 60 PFMDLELEPH GQQLAAAEEE DGAGRQGVDA GVPFGVDGAA AAAAAAAAAA RKDRHSKIST 120 AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN MSKAAIREIM SDDASSVCEE 180 DGSSSLSVDG KQQQQHSNPA DRGGGAGDHK GAAHGHSDGK KPAKPRRAAA NPKPPRRLAN 240 AHPVPDKESR AKARERARER TKEKNRMRWV TLASAISVEA ATAAAAAGED KSPTSPSNNL 300 NHSSSTNLVS TELEDGSSST RHNGVGVSGG RMQEISAASE ASDVIMAFAN GGAYGDSGSY 360 YLQQQHQQDQ WELGGVVYAN SRHYC

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MDIPLYQQLQ LTPPSPKPDH HHHHHSTFFY YHHHPPPSPS FPSFPSPAAA TIASPVPAMH  60
PFMDLELEPH GQQLAAAEEE DGAGRQGVDA GVPFGVDGAA AAAAAAAAAA RKDRHSKIST  120
AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN MSKAAIREIM SDDASSVCEE  180
DGSSSLSVDG KQQQQHSNPA DRGGGAGDHK GAAHGHSDGK KPAKPRRAAA NPKPPRRLAN  240
AHPVPDKESR AKARERARER TKEKNRMRWV TLASAISVEA ATAAAAAGED KSPTSPSNNL  300
NHSSSTNLVS TELEDGSSST RHNGVGVSGG RMQEISAASE ASDVIMAFAN GGAYGDSGSY  360
YLQQQHQQDQ WELGGVVYAN SRHYC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB491557	0.0	AB491557.1 Oryza barthii tb1 gene for teosinte branched 1, complete cds, strain: W0652.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630237.1	0.0	transcription factor TB1-like
Swissprot	Q8LN68	0.0	TB1_ORYSJ; Transcription factor TB1
TrEMBL	A0A0D3FN12	0.0	A0A0D3FN12_9ORYZ; Uncharacterized protein
STRING	OBART03G31290.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	7e-23	TCP domain protein 12

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]