PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G30600.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YA
Protein Properties Length: 352aa    MW: 38136.6 Da    PI: 9.8175
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G30600.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1056.5e-33256312158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekk+  ksrkpylheSRh+hA+rR+Rg+gGrF
  OBART03G30600.3 256 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKSRKPYLHESRHQHAMRRARGTGGRF 312
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.5E-37254315IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.398255315IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-28257312IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.7E-25258280IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860260280IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.7E-25289312IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDPPVHAAEL NHRNNYGPLS SPNPISLRIR ARLSLARARE PVAAAAASSS SSEEPEPQRR  60
RAPPPIGRPL GEREREIDRV LLAAASAPWL LTASMESRPG GTNLVEPRGQ GALPSGIPIQ  120
QPWWTTSAGV GAVSPAVVAP GSGAGISLSG RDGGGDDAAE ESSDDSRRSG ETKDGSTGQE  180
KHHATSQMTA LASDYLTPFS QLELNQPIAS AAYQYPDSYY MGMVGPYGPQ AMSAQTHFQL  240
PGLTHSRMPL PLEISEEPVY VNAKQYHGIL RRRQSRAKAE LEKKVVKSRK PYLHESRHQH  300
AMRRARGTGG RFLNTKKNED GAPSEKAEPN KGEQNSGYRR IPPDLQLLQK ET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-21256319265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8470120.0EU847012.1 Oryza sativa Japonica Group clone KCS256D08 CCAAT-binding transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLA0A0D3FMS30.0A0A0D3FMS3_9ORYZ; Uncharacterized protein
STRINGOBART03G30600.30.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-39nuclear factor Y, subunit A9