PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G29860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 319aa    MW: 34098.7 Da    PI: 4.2552
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G29860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.3e-17215251135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  OBART03G29860.1 215 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 251
                      **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.29174109IPR010399Tify domain
SMARTSM009792.6E-974109IPR010399Tify domain
PfamPF062001.8E-1177108IPR010399Tify domain
PROSITE profilePS5101713.364143185IPR010402CCT domain
PfamPF062031.3E-14143183IPR010402CCT domain
SMARTSM004019.7E-9209262IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524209268IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11213259No hitNo description
CDDcd002029.81E-17214269No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13214254IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14215251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPDAAAAAAA AQDADAVMRD APADAAAGGG DNDDDDGDDS TEEDEEEDDD EEGDEEELPP  60
AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESLTPEKV QAVLLLLGSS EMPPGLANMV  120
LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG  180
QFAGRANMEG ESLSPGCELA SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN  240
ACGLMWANKG TLRNCPKAKV ESSVVATEQS NAAVSPSGID NKELVVPNPE NITASHGEVM  300
GDSTPANEAE IGAPKAQSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050250.0AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.10.0GATA transcription factor 18
SwissprotQ10F250.0GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0D3FMI60.0A0A0D3FMI6_9ORYZ; Uncharacterized protein
TrEMBLI1NVX20.0I1NVX2_ORYGL; Uncharacterized protein
STRINGORGLA01G0401200.10.0(Oryza glaberrima)
STRINGOBART03G29860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-67ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]