PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART03G29660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 197aa MW: 21714.9 Da PI: 4.7119 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.3 | 1.3e-08 | 133 | 165 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +e+ LA +gL+ +q+++WF N R + OBART03G29660.1 133 HPYPNDNEKLMLAVATGLSRTQISNWFINARVR 165 89*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.175 | 106 | 169 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.35E-11 | 109 | 170 | No hit | No description |
SMART | SM00389 | 5.4E-9 | 109 | 173 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 114 | 175 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.05E-17 | 115 | 177 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-17 | 126 | 165 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MANLASYYRV ALSEDCKVRL TMVASKQLHS QRCGGHYCQL HHHRPEEIAG AGAESHRRDG 60 SSGCGGAGPM VEDDEGDGEE EEEEEEEEVV NRVVRRTKQA AAARAEQAWR PLRGLPEDAV 120 GVLRAWLFDH FLHPYPNDNE KLMLAVATGL SRTQISNWFI NARVRLWKPM VEEMYNDEFD 180 DDDAGSGGGG GGASSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-17 | 115 | 173 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-17 | 115 | 173 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 1e-17 | 115 | 173 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-17 | 115 | 173 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064665 | 1e-180 | AK064665.1 Oryza sativa Japonica Group cDNA clone:002-115-B07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879418.1 | 7e-53 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A0D3FMG0 | 1e-143 | A0A0D3FMG0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G29660.1 | 1e-144 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-36 | BEL1-like homeodomain 11 |